Summary

The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.

AVX54747.1
JCVISYN3A_0375

Uncharacterized protein.
M. mycoides homolog: Q6MTH1.
TIGRfam Classification: 1=Unknown.
Category: Nonessential.

Statistics

Total GO Annotation: 3
Unique PROST Go: 3
Unique BLAST Go: 0
Unique Foldseek Go: 0

Total Homologs: 4
Unique PROST Homologs: 3
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0

Literature

Danchin and Fang [1]: NA
Yang and Tsui [2]: ATP-dependent Clp protease proteolytic subunit
Antczak et al. [3]: Hypothetical protein
Zhang et al. [4]: GO:0044464|cell part
Bianchi et al. [5]: Unclear - Orthology to 1TD6 PDB - MPN330

Structures and Sequence Alignment

The best structural homolog that predicted by 2. PF was P94569 (TPR repeat-containing protein YsoA) with a FATCAT P-Value: 7.66e-11 and RMSD of 3.03 angstrom. The sequence alignment identity is 16.7%.
Structural alignment shown in left. Query protein AVX54747.1 colored as red in alignment, homolog P94569 colored as blue. Query protein AVX54747.1 is also shown in right top, homolog P94569 showed in right bottom. They are colored based on secondary structures. 

  AVX54747.1 ----------------------------------------------------------------------------M-K----NYYEQTLDQI--RDLID 17
      P94569 MTHDKKNAKIIPFPHLKDRLVEKGMSSLKEKKYQEALELFSEAMKYDDTESDLHLGMAICFLELGELEEAESVCEKMLKEGYGHYF--TVLQVYMTILIQ 98

  AVX54747.1 NNKFDKALK-LINQELEISYIPTDFENSLYKFLKEIKEKQATNLNK-------TY-SVLEIKNLLNSKNQLDQIIAIKNLININIRLIID-DIINY--LL 105
      P94569 LKKYE-EVKSTIEAVLEENQLPAESAEQFYKLL-DFSRKM-TDPDREDEAWAEEYEDTIDTEKVLASPE--EQM----NLIH-SLK---DRNVAKYTGLL 185

  AVX54747.1 N--LENVYEN---KALLLISLADQQIDWNFDVVK-NKNTSFKINPILLNTNEIFNTYYQIEQNILD-CIDQKN--IF--LNQTCKQILFSYFIYSF-PYV 193
      P94569 KTILQDPSAHPIIKTMIVMLLAEHEYSKPVHISKFGE--SLTIEPSEIVPPDAAPILHRV-LRVLDETLGNENPTLYAAVEELWRRHL--YVLYPFQP-- 278

  AVX54747.1 EILKSSETIIAVI-KLSYQLNDLEFDLKKLNKLIEFDDKKVD------KIIDEIKKTGVF 246
      P94569 KLL-SADLWAAALHKVGYEMHGIEIESEELHMMYEFTDRELDEACTMLKDIEEISYL--- 334

Go Annotations

1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.

Source GO Description
5. P GO:0016829 lyase activity
5. P GO:0016491 oxidoreductase activity
5. P GO:0030089 phycobilisome

Uniprot GO Annotations

GO Description

Homologs

1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.

Source Homolog Description Fatcat Pvalue PROST Evalue BLAST Evalue Foldseek TMScore
2. PF P94569 TPR repeat-containing protein YsoA 7.66e-11 3.90e-04 NA 0.6289
5. P P73638 Phycocyanobilin lyase subunit alpha 2.81e-03 4.46e-03 NA NA
5. P P75455 Uncharacterized protein MG237 homolog 2.40e-07 4.94e-11 NA NA
5. P P47479 Uncharacterized protein MG237 1.71e-07 1.31e-09 NA NA