Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54748.1
JCVISYN3A_0376
Uncharacterized protein.
M. mycoides homolog: Q6MTH0.
TIGRfam Classification: 1=Unknown.
Category: Quasiessential.
Statistics
Total GO Annotation: 3
Unique PROST Go: 3
Unique BLAST Go: 0
Unique Foldseek Go: 0
Total Homologs: 7
Unique PROST Homologs: 7
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by 5. P was
C3N5V3
(50S ribosomal protein L34e) with a FATCAT P-Value: 0.0445 and RMSD of 0.27 angstrom. The sequence alignment identity is 17.6%.
Structural alignment shown in left. Query protein AVX54748.1 colored as red in alignment, homolog C3N5V3 colored as blue.
Query protein AVX54748.1 is also shown in right top, homolog C3N5V3 showed in right bottom. They are colored based on secondary structures.
AVX54748.1 --------MKLKKQVYFKMNN----INFDPKNYKYFKDYNFFMVKFFNITCSLCDSYEISFVTNQSPIPIGSLIKKQTKKLSEKEVEQLVNEQIVIWDKL 88 C3N5V3 MPRPALRSRSLRR-IYVKLPSGKTAIHYERK--K--ND----IPK-----CAMC----------KKPLH-G--VK--TNFL-HK------------YGKS 58 AVX54748.1 EENNYKKNIP-----TFLCDECWNTLTNQCN----- 114 C3N5V3 E----KR--PERPFGGYLCSSC---LAQLIKAMVRQ 85
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 5. P | GO:0006412 | translation |
| 5. P | GO:0005840 | ribosome |
| 5. P | GO:0003735 | structural constituent of ribosome |
Uniprot GO Annotations
| GO | Description |
|---|
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 5. P | A6UW33 | 50S ribosomal protein L34e | 5.63e-01 | 1.64e-02 | NA | NA |
| 5. P | O67138 | Uncharacterized protein aq_1029 | 4.03e-01 | 1.45e-03 | NA | NA |
| 5. P | C3MVX7 | 50S ribosomal protein L34e | 4.46e-02 | 3.45e-02 | NA | NA |
| 5. P | Q3AJ96 | 50S ribosomal protein L33 2 | 8.99e-01 | 2.31e-02 | NA | NA |
| 5. P | C3N5V3 | 50S ribosomal protein L34e | 4.45e-02 | 3.45e-02 | NA | NA |
| 5. P | C4KHI2 | 50S ribosomal protein L34e | 4.46e-02 | 3.45e-02 | NA | NA |
| 5. P | P49565 | 50S ribosomal protein L33, chloroplastic | 8.77e-01 | 3.65e-02 | NA | NA |