Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54771.1
JCVISYN3A_0407
RNA polymerase subunit sigma.
M. mycoides homolog: Q6MTE2.
TIGRfam Classification: 4=Probable.
Category: Essential.
Statistics
Total GO Annotation: 46
Unique PROST Go: 1
Unique BLAST Go: 8
Unique Foldseek Go: 0
Total Homologs: 162
Unique PROST Homologs: 0
Unique BLAST Homologs: 7
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by 1. PBF was
Q5HNY7
(RNA polymerase sigma factor SigA) with a FATCAT P-Value: 0 and RMSD of 2.19 angstrom. The sequence alignment identity is 37.4%.
Structural alignment shown in left. Query protein AVX54771.1 colored as red in alignment, homolog Q5HNY7 colored as blue.
Query protein AVX54771.1 is also shown in right top, homolog Q5HNY7 showed in right bottom. They are colored based on secondary structures.
AVX54771.1 MAKFNNKSELKKIASFNDFLDYTVSFANKNNNEISSEDVLEVFANIFPNASDNESEKILDVLQQKGIVFSD--LIDDDIEQEELEEVEEEIEDVNLEEL- 97 Q5HNY7 -------------------------------------------------MSDNQ-VKI-----KKQTI--DPTLTLEDVKKQLIDKGKKE-GHLSHEEIA 42 AVX54771.1 EELENLE-DLDDLD--FD-L---DST-SNNLD--DYDENVN-DDLDEFKEAKSAAIKGRKSAKSSNHMKYRVGGISNETKIQDIIKTYFYKIGQAPILTK 186 Q5HNY7 EKLQNFEMDSDQMDDFFDQLNDNDITLVNEKDSSDTDDKINPNDL---------------SAPP---------GV----KINDPVRMYLKEIGRVNLLSA 114 AVX54771.1 EQEIIYAKMAVSDDPEDVQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 286 Q5HNY7 QEEIELAKRIEQGD--EI--AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPV 210 AVX54771.1 HMVETINKLARVERQLTQELGREPNADEIANRVGE--GITGDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDKDMVSPNEYTEKEILKEVMDKVFED 384 Q5HNY7 HMVETINKLIRVQRQLLQDLGRDPAPEEI----GEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDT 306 AVX54771.1 MPPREEKVIRMRYGIVPTRLRTLLRLAQECNDSNAKELKQAIEELDIHLDTPIEKVRKFNNQIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKTIR 484 Q5HNY7 LTDREENVLRLRFG------------------------------LD---DG-----R----------------TRTLEEVGKVFGVTRERIRQIEAKALR 352 AVX54771.1 KLKQPSPNNKSGKTLKEFYKGY 506 Q5HNY7 KLRHPS---RS-KRLKDFMD-- 368
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 1. PBF | GO:0016987 | sigma factor activity |
| 1. PBF | GO:0001108 | bacterial-type RNA polymerase holo enzyme binding |
| 1. PBF | GO:0003677 | DNA binding |
| 1. PBF | GO:1900233 | positive regulation of single-species biofilm formation on inanimate substrate |
| 1. PBF | GO:1901000 | regulation of response to salt stress |
| 1. PBF | GO:1900377 | negative regulation of secondary metabolite biosynthetic process |
| 1. PBF | GO:0001123 | |
| 1. PBF | GO:0005737 | cytoplasm |
| 1. PBF | GO:2000145 | regulation of cell motility |
| 1. PBF | GO:0006352 | DNA-templated transcription, initiation |
| 1. PBF | GO:0009408 | response to heat |
| 1. PBF | GO:1900407 | regulation of cellular response to oxidative stress |
| 1. PBF | GO:1900034 | regulation of cellular response to heat |
| 2. PF | GO:0050921 | positive regulation of chemotaxis |
| 3. BF | GO:0030436 | asexual sporulation |
| 3. BF | GO:0043620 | regulation of DNA-templated transcription in response to stress |
| 3. BF | GO:0071978 | bacterial-type flagellum-dependent swarming motility |
| 3. BF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
| 3. BF | GO:0030435 | sporulation resulting in formation of a cellular spore |
| 3. BF | GO:0006355 | regulation of transcription, DNA-templated |
| 4. PB | GO:0010114 | response to red light |
| 4. PB | GO:0043175 | RNA polymerase core enzyme binding |
| 4. PB | GO:0009658 | chloroplast organization |
| 4. PB | GO:0010218 | response to far red light |
| 4. PB | GO:0009415 | response to water |
| 4. PB | GO:0071483 | cellular response to blue light |
| 4. PB | GO:0071482 | cellular response to light stimulus |
| 4. PB | GO:2001141 | regulation of RNA biosynthetic process |
| 4. PB | GO:0010207 | photosystem II assembly |
| 4. PB | GO:0090351 | seedling development |
| 4. PB | GO:0071461 | cellular response to redox state |
| 4. PB | GO:0080005 | photosystem stoichiometry adjustment |
| 4. PB | GO:0001000 | bacterial-type RNA polymerase core enzyme binding |
| 4. PB | GO:0009410 | response to xenobiotic stimulus |
| 4. PB | GO:0006399 | tRNA metabolic process |
| 4. PB | GO:0071472 | cellular response to salt stress |
| 4. PB | GO:0009553 | embryo sac development |
| 5. P | GO:0009507 | chloroplast |
| 7. B | GO:0042800 | histone methyltransferase activity (H3-K4 specific) |
| 7. B | GO:0034059 | response to anoxia |
| 7. B | GO:0001121 | |
| 7. B | GO:0031421 | invertasome |
| 7. B | GO:0009009 | site-specific recombinase activity |
| 7. B | GO:0097692 | histone H3-K4 monomethylation |
| 7. B | GO:0044666 | MLL3/4 complex |
| 7. B | GO:0000985 |
Uniprot GO Annotations
| GO | Description |
|---|---|
| GO:0016987 | sigma factor activity |
| GO:0003677 | DNA binding |
| GO:2000142 | regulation of DNA-templated transcription, initiation |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0006352 | DNA-templated transcription, initiation |
| GO:0006355 | regulation of transcription, DNA-templated |
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 1. PBF | P0A4J0 | RNA polymerase sigma factor SigA | 3.33e-16 | 1.65e-33 | 4.57e-93 | 0.7289 |
| 1. PBF | Q6GGD8 | RNA polymerase sigma factor SigA | 2.70e-14 | 2.05e-33 | 2.32e-88 | 0.7053 |
| 1. PBF | P52327 | RNA polymerase sigma factor RpoD | 6.20e-07 | 3.20e-03 | 8.14e-81 | 0.4921 |
| 1. PBF | P27785 | RNA polymerase sigma factor SigA | 0.00e+00 | 2.70e-09 | 1.18e-71 | 0.8221 |
| 1. PBF | P0A2E6 | RNA polymerase sigma factor RpoS | 1.73e-13 | 1.71e-17 | 4.24e-58 | 0.7889 |
| 1. PBF | P33118 | RNA polymerase sigma factor SigB | 0.00e+00 | 1.10e-14 | 1.23e-61 | 0.7783 |
| 1. PBF | Q89B10 | RNA polymerase sigma factor RpoD | 1.68e-07 | 7.97e-05 | 6.94e-80 | 0.471 |
| 1. PBF | P37970 | RNA polymerase sigma-F factor | 2.50e-07 | 1.23e-04 | 6.51e-13 | 0.5586 |
| 1. PBF | P59117 | RNA polymerase sigma factor RpoD | 9.87e-07 | 3.55e-05 | 3.40e-70 | 0.5259 |
| 1. PBF | O24744 | RNA polymerase sigma factor RpoD | 2.11e-08 | 4.00e-04 | 2.57e-80 | 0.4611 |
| 1. PBF | P52328 | RNA polymerase sigma factor SigA | 1.05e-09 | 2.02e-38 | 9.52e-91 | 0.6787 |
| 1. PBF | P77951 | RNA polymerase sigma factor SigA | 4.05e-14 | 3.53e-12 | 5.80e-78 | 0.6321 |
| 1. PBF | Q2K619 | RNA polymerase sigma factor RpoD | 1.11e-06 | 2.68e-03 | 2.00e-81 | 0.7649 |
| 1. PBF | Q31QR8 | RNA polymerase sigma factor SigA4 | 2.65e-14 | 4.09e-06 | 1.77e-46 | 0.7911 |
| 1. PBF | P18182 | RNA polymerase principal sigma factor HrdA | 0.00e+00 | 1.90e-24 | 3.54e-69 | 0.6607 |
| 1. PBF | Q68VQ5 | RNA polymerase sigma factor RpoD | 4.16e-08 | 1.26e-06 | 1.23e-79 | 0.767 |
| 1. PBF | Q31QG5 | RNA polymerase sigma factor SigA3 | 0.00e+00 | 9.18e-08 | 5.39e-59 | 0.7904 |
| 1. PBF | P35540 | RNA polymerase sigma factor RpoS | 2.48e-13 | 9.64e-17 | 4.77e-58 | 0.7571 |
| 1. PBF | Q03066 | RNA polymerase sigma-C factor | 1.41e-07 | 1.29e-28 | 2.08e-49 | 0.5877 |
| 1. PBF | P45684 | RNA polymerase sigma factor RpoS | 2.07e-12 | 5.33e-19 | 3.25e-59 | 0.729 |
| 1. PBF | Q8CP24 | RNA polymerase sigma factor SigA | 0.00e+00 | 5.90e-33 | 2.19e-87 | 0.7012 |
| 1. PBF | Q5HFJ9 | RNA polymerase sigma factor SigA | 1.14e-13 | 2.05e-33 | 2.32e-88 | 0.6829 |
| 1. PBF | F5ZTT9 | RNA polymerase sigma factor RpoS | 1.93e-12 | 1.71e-17 | 4.24e-58 | 0.7448 |
| 1. PBF | Q9Z7F0 | RNA polymerase sigma factor SigA | 2.86e-06 | 6.11e-11 | 2.46e-68 | 0.4624 |
| 1. PBF | P57163 | RNA polymerase sigma factor RpoD | 1.39e-07 | 3.88e-05 | 3.41e-80 | 0.7462 |
| 1. PBF | P42378 | RNA polymerase sigma factor RpoH | 3.71e-06 | 6.27e-03 | 3.26e-12 | 0.577 |
| 1. PBF | P0A2E7 | RNA polymerase sigma factor RpoS | 2.33e-13 | 1.71e-17 | 4.24e-58 | 0.7448 |
| 1. PBF | Q8PG33 | RNA polymerase sigma factor RpoD | 4.02e-07 | 1.23e-04 | 4.90e-81 | 0.7403 |
| 1. PBF | Q59914 | RNA polymerase principal sigma factor HrdD | 1.10e-14 | 4.46e-18 | 7.36e-58 | 0.7624 |
| 1. PBF | Q4UJT1 | RNA polymerase sigma factor RpoD | 2.51e-08 | 2.46e-07 | 1.33e-79 | 0.7681 |
| 1. PBF | Q04506 | RNA polymerase sigma factor SigA | 0.00e+00 | 1.88e-33 | 1.88e-86 | 0.7001 |
| 1. PBF | Q87DT7 | RNA polymerase sigma factor RpoD | 1.80e-06 | 2.14e-03 | 9.61e-81 | 0.7386 |
| 1. PBF | Q1RKH7 | RNA polymerase sigma factor RpoD | 1.13e-07 | 6.16e-06 | 3.71e-79 | 0.4658 |
| 1. PBF | Q9PDM9 | RNA polymerase sigma factor RpoD | 5.11e-08 | 2.79e-03 | 9.51e-81 | 0.7582 |
| 1. PBF | P78022 | RNA polymerase sigma factor SigA | 5.97e-09 | 2.38e-20 | 4.38e-85 | 0.5702 |
| 1. PBF | O66381 | RNA polymerase sigma factor SigA | 9.99e-16 | 1.64e-38 | 6.22e-93 | 0.6988 |
| 1. PBF | Q9KI19 | RNA polymerase sigma factor RpoS | 2.44e-15 | 4.77e-18 | 3.28e-47 | 0.707 |
| 1. PBF | P0A603 | RNA polymerase sigma factor SigA | 7.74e-12 | 1.32e-05 | 1.04e-72 | 0.561 |
| 1. PBF | Q5HNY7 | RNA polymerase sigma factor SigA | 0.00e+00 | 5.90e-33 | 2.19e-87 | 0.6937 |
| 1. PBF | P26480 | RNA polymerase sigma factor RpoD | 3.75e-08 | 3.06e-04 | 1.11e-83 | 0.7633 |
| 1. PBF | P52322 | RNA polymerase sigma factor SigA | 4.24e-06 | 2.10e-29 | 4.58e-69 | 0.6225 |
| 1. PBF | P18333 | RNA polymerase sigma factor SigA | 1.17e-07 | 1.85e-10 | 3.77e-68 | 0.4746 |
| 1. PBF | P77994 | RNA polymerase sigma factor SigA | 3.00e-15 | 8.21e-34 | 6.85e-79 | 0.6744 |
| 1. PBF | P0A2E3 | RNA polymerase sigma factor RpoD | 1.14e-07 | 6.89e-06 | 5.24e-81 | 0.4594 |
| 1. PBF | O83506 | RNA polymerase sigma factor RpoD | 1.56e-07 | 8.23e-05 | 3.40e-75 | 0.4919 |
| 1. PBF | Q60012 | RNA polymerase principal sigma factor HrdD | 4.11e-15 | 6.64e-17 | 4.89e-60 | 0.7486 |
| 1. PBF | P52323 | RNA polymerase sigma factor RpoD | 1.08e-08 | 6.10e-05 | 3.18e-71 | 0.4743 |
| 1. PBF | Q31ME3 | RNA polymerase sigma factor SigA2 | 0.00e+00 | 4.11e-07 | 6.42e-57 | 0.7933 |
| 1. PBF | Q9EZJ8 | RNA polymerase sigma factor SigA | 6.13e-09 | 1.89e-21 | 5.33e-77 | 0.5673 |
| 1. PBF | P74565 | RNA polymerase sigma factor SigA | 3.64e-07 | 1.87e-30 | 1.66e-68 | 0.5832 |
| 1. PBF | P06224 | RNA polymerase sigma factor SigA | 0.00e+00 | 1.88e-33 | 2.42e-92 | 0.6941 |
| 1. PBF | P43766 | RNA polymerase sigma factor RpoD | 6.65e-08 | 1.47e-04 | 1.89e-86 | 0.4701 |
| 1. PBF | O51804 | RNA polymerase sigma factor RpoS | 8.78e-13 | 1.88e-13 | 1.02e-59 | 0.7352 |
| 1. PBF | Q99TT5 | RNA polymerase sigma factor SigA | 9.64e-14 | 6.05e-34 | 3.80e-88 | 0.6963 |
| 1. PBF | P52326 | RNA polymerase sigma factor RpoD | 1.51e-08 | 1.88e-04 | 4.25e-82 | 0.7597 |
| 1. PBF | Q59996 | Probable RNA polymerase sigma-C factor | 8.88e-06 | 1.28e-25 | 2.57e-53 | 0.6112 |
| 1. PBF | Q03065 | RNA polymerase sigma-B factor | 1.71e-14 | 6.03e-10 | 1.50e-54 | 0.7205 |
| 1. PBF | P58290 | RNA polymerase sigma factor SigA (Fragment) | 0.00e+00 | 3.32e-28 | 4.28e-86 | 0.7425 |
| 1. PBF | P9WGI4 | RNA polymerase sigma factor SigB | 0.00e+00 | 6.24e-12 | 2.39e-63 | 0.786 |
| 1. PBF | O33662 | RNA polymerase sigma factor SigA | 7.55e-15 | 1.39e-34 | 6.44e-91 | 0.7057 |
| 1. PBF | P52325 | RNA polymerase sigma factor RpoD | 2.32e-07 | 1.49e-03 | 1.18e-80 | 0.4602 |
| 1. PBF | P33451 | RNA polymerase sigma factor RpoD | 1.19e-07 | 2.62e-06 | 1.25e-79 | 0.4666 |
| 1. PBF | P47765 | RNA polymerase sigma factor RpoS | 2.00e-15 | 3.48e-19 | 3.25e-58 | 0.7408 |
| 1. PBF | P0A2E4 | RNA polymerase sigma factor RpoD | 1.21e-07 | 6.89e-06 | 5.24e-81 | 0.4671 |
| 1. PBF | P38023 | RNA polymerase sigma factor SigA1 | 7.62e-13 | 5.38e-28 | 2.01e-70 | 0.6686 |
| 1. PBF | B1VXR4 | RNA polymerase principal sigma factor HrdB | 3.64e-11 | 3.53e-12 | 5.80e-78 | 0.528 |
| 1. PBF | P47491 | RNA polymerase sigma factor SigA | 4.02e-09 | 8.27e-22 | 1.00e-82 | 0.5466 |
| 1. PBF | P56835 | RNA polymerase sigma factor SigA | 2.80e-07 | 1.26e-10 | 1.31e-68 | 0.474 |
| 1. PBF | P37971 | RNA polymerase sigma-F factor | 3.97e-07 | 1.32e-03 | 1.83e-13 | 0.6313 |
| 1. PBF | P18183 | RNA polymerase principal sigma factor HrdB | 3.96e-10 | 7.61e-11 | 2.45e-78 | 0.6496 |
| 1. PBF | P0A0I9 | RNA polymerase sigma factor SigA | 1.19e-14 | 2.05e-33 | 2.32e-88 | 0.6895 |
| 1. PBF | Q6G905 | RNA polymerase sigma factor SigA | 1.11e-16 | 2.05e-33 | 2.32e-88 | 0.6928 |
| 1. PBF | P52331 | RNA polymerase sigma factor SigA | 1.11e-15 | 4.06e-36 | 6.41e-90 | 0.6913 |
| 1. PBF | P32001 | RNA polymerase sigma factor RpoD | 7.68e-09 | 3.65e-04 | 5.84e-81 | 0.4801 |
| 1. PBF | P0A0I8 | RNA polymerase sigma factor SigA | 1.11e-16 | 2.05e-33 | 2.32e-88 | 0.6845 |
| 1. PBF | P33452 | RNA polymerase sigma factor RpoD | 5.40e-06 | 7.51e-03 | 2.02e-81 | 0.7676 |
| 1. PBF | P18249 | RNA polymerase principal sigma factor HrdD | 1.28e-14 | 2.94e-17 | 2.00e-62 | 0.7621 |
| 1. PBF | P52324 | RNA polymerase sigma factor RpoD | 2.30e-08 | 7.37e-03 | 2.13e-82 | 0.7731 |
| 1. PBF | P52329 | RNA polymerase sigma factor SigA | 1.69e-12 | 2.59e-36 | 3.01e-92 | 0.6438 |
| 1. PBF | P0DM81 | RNA polymerase sigma factor RpoS | 4.09e-13 | 1.71e-17 | 4.24e-58 | 0.7472 |
| 1. PBF | Q72L95 | RNA polymerase sigma factor SigA | 8.78e-09 | 2.26e-31 | 1.17e-73 | 0.6091 |
| 1. PBF | P33656 | RNA polymerase sigma factor SigA | 4.24e-13 | 1.73e-32 | 2.11e-80 | 0.6809 |
| 1. PBF | Q59753 | RNA polymerase sigma factor RpoD | 5.30e-06 | 1.49e-03 | 1.25e-81 | 0.4692 |
| 1. PBF | P0A4I9 | RNA polymerase sigma factor SigA | 0.00e+00 | 1.65e-33 | 4.57e-93 | 0.713 |
| 1. PBF | P9WGI0 | RNA polymerase sigma factor SigA | 1.32e-12 | 1.32e-05 | 1.04e-72 | 0.5571 |
| 1. PBF | P61540 | RNA polymerase sigma factor RpoD | 2.65e-06 | 3.55e-05 | 3.40e-70 | 0.5184 |
| 1. PBF | D0ZVL4 | RNA polymerase sigma factor RpoS | 4.06e-11 | 1.71e-17 | 4.24e-58 | 0.7419 |
| 1. PBF | Q8P4H2 | RNA polymerase sigma factor RpoD | 2.20e-07 | 1.49e-04 | 5.98e-81 | 0.7491 |
| 1. PBF | Q92BQ6 | RNA polymerase sigma factor SigA | 5.56e-14 | 1.65e-36 | 6.41e-90 | 0.6667 |
| 1. PBF | Q92FZ8 | RNA polymerase sigma factor RpoD | 4.75e-08 | 4.42e-07 | 1.10e-79 | 0.4757 |
| 1. PBF | P26683 | RNA polymerase sigma factor SigA | 4.94e-12 | 7.01e-33 | 2.23e-73 | 0.6807 |
| 1. PBF | P18184 | RNA polymerase principal sigma factor HrdC | 0.00e+00 | 1.66e-19 | 8.22e-62 | 0.7725 |
| 3. BF | Q9ZMY3 | RNA polymerase sigma factor RpoD | 2.40e-05 | NA | 1.40e-73 | 0.4598 |
| 3. BF | P0CZ15 | RNA polymerase sigma factor RpoD | 1.36e-06 | NA | 1.23e-80 | 0.7557 |
| 3. BF | P26768 | Putative RNA polymerase sigma-G factor (Fragment) | 1.21e-05 | NA | 4.82e-10 | 0.8247 |
| 3. BF | P44404 | RNA polymerase sigma factor RpoH | 8.83e-07 | NA | 3.61e-17 | 0.6791 |
| 3. BF | P17211 | RNA polymerase sigma factor WhiG | 1.47e-05 | NA | 5.04e-06 | 0.4397 |
| 3. BF | P50511 | RNA polymerase sigma factor RpoH | 5.65e-07 | NA | 3.28e-13 | 0.6531 |
| 3. BF | P0AEM7 | RNA polymerase sigma factor FliA | 6.62e-04 | NA | 2.79e-07 | 0.3052 |
| 3. BF | P50509 | RNA polymerase sigma factor RpoH | 2.35e-06 | NA | 9.35e-15 | 0.6493 |
| 3. BF | P10726 | RNA polymerase sigma-D factor | 3.90e-09 | NA | 0.019 | 0.4792 |
| 3. BF | P62182 | RNA polymerase sigma-28 factor | 7.24e-06 | NA | 3.52e-08 | 0.5959 |
| 3. BF | P50512 | RNA polymerase sigma factor RpoH | 3.48e-08 | NA | 6.26e-16 | 0.638 |
| 3. BF | P11539 | RNA polymerase sigma factor RpoH | 2.23e-06 | NA | 1.15e-11 | 0.592 |
| 3. BF | P19433 | RNA polymerase sigma-B factor | 1.28e-05 | NA | 6.30e-18 | 0.5143 |
| 3. BF | P33657 | RNA polymerase sigma-E factor | 3.46e-05 | NA | 5.47e-08 | 0.5278 |
| 3. BF | D5AQI9 | RNA polymerase sigma factor RpoD | 1.46e-06 | NA | 1.04e-81 | 0.7676 |
| 3. BF | P33658 | RNA polymerase sigma-G factor | 1.18e-14 | NA | 1.11e-14 | 0.75 |
| 3. BF | Q8DD54 | RNA polymerase sigma factor RpoH | 3.48e-06 | NA | 7.91e-13 | 0.6016 |
| 3. BF | P0A2E9 | RNA polymerase sigma factor FliA | 4.72e-04 | NA | 1.26e-09 | 0.3187 |
| 3. BF | P50507 | RNA polymerase sigma factor RpoH | 5.20e-08 | NA | 9.64e-15 | 0.638 |
| 3. BF | Q8KA76 | RNA polymerase sigma factor RpoH | 2.01e-07 | NA | 3.09e-11 | 0.6666 |
| 3. BF | P62178 | RNA polymerase sigma-35 factor | 1.13e-06 | NA | 6.17e-12 | 0.6638 |
| 3. BF | P52621 | RNA polymerase sigma factor FliA | 7.62e-04 | NA | 1.99e-04 | 0.3107 |
| 3. BF | P17869 | RNA polymerase sigma-H factor | 1.61e-05 | NA | 8.30e-04 | 0.4809 |
| 3. BF | P17531 | RNA polymerase sigma factor RpoD | 1.78e-06 | NA | 3.74e-81 | 0.4681 |
| 3. BF | P9WGI2 | RNA polymerase sigma factor SigF | 4.74e-07 | NA | 3.07e-13 | 0.6223 |
| 3. BF | P62177 | RNA polymerase sigma-35 factor | 2.74e-06 | NA | 6.17e-12 | 0.4403 |
| 3. BF | O05385 | RNA polymerase sigma factor RpoH | 4.28e-06 | NA | 1.27e-09 | 0.5981 |
| 3. BF | P55993 | RNA polymerase sigma factor RpoD | 7.55e-09 | NA | 1.52e-73 | 0.4719 |
| 3. BF | P0AGB4 | RNA polymerase sigma factor RpoH | 2.10e-06 | NA | 1.81e-11 | 0.6553 |
| 3. BF | P06222 | RNA polymerase sigma-E factor | 4.62e-06 | NA | 1.06e-10 | 0.4909 |
| 3. BF | P12254 | RNA polymerase sigma-K factor | 2.19e-05 | NA | 2.47e-08 | 0.4798 |
| 3. BF | Q83BB6 | RNA polymerase sigma factor RpoD | 8.90e-06 | NA | 2.42e-78 | 0.4642 |
| 3. BF | P35145 | RNA polymerase sigma-F factor | 5.11e-15 | NA | 1.33e-17 | 0.7921 |
| 3. BF | P02964 | RNA polymerase sigma-H factor | 1.24e-04 | NA | 0.002 | 0.5039 |
| 3. BF | P19940 | RNA polymerase sigma-G factor | 1.43e-14 | NA | 3.45e-15 | 0.7426 |
| 3. BF | P26764 | RNA polymerase sigma-F factor | 4.50e-14 | NA | 2.64e-19 | 0.7784 |
| 3. BF | P50510 | RNA polymerase sigma factor RpoH | 1.41e-08 | NA | 1.55e-11 | 0.6422 |
| 3. BF | P62179 | RNA polymerase sigma-35 factor | 2.54e-06 | NA | 6.17e-12 | 0.6686 |
| 3. BF | P0AEM8 | RNA polymerase sigma factor FliA | 1.03e-05 | NA | 2.79e-07 | 0.2864 |
| 3. BF | P07860 | RNA polymerase sigma-F factor | 2.05e-10 | NA | 4.92e-20 | 0.6665 |
| 3. BF | P62180 | RNA polymerase sigma-28 factor | 5.58e-06 | NA | 3.52e-08 | 0.4515 |
| 3. BF | P06574 | RNA polymerase sigma-B factor | 4.58e-08 | NA | 1.49e-04 | 0.7942 |
| 3. BF | P0CAW9 | RNA polymerase sigma factor RpoH | 3.42e-08 | NA | 1.44e-23 | 0.6868 |
| 3. BF | B8H3C3 | RNA polymerase sigma factor RpoH | 3.12e-08 | NA | 1.44e-23 | 0.6889 |
| 3. BF | Q07083 | RNA polymerase sigma-C factor | 7.18e-08 | NA | 3.69e-27 | 0.6011 |
| 3. BF | Q89B27 | RNA polymerase sigma factor RpoH | 3.43e-06 | NA | 1.80e-10 | 0.4691 |
| 3. BF | P62181 | RNA polymerase sigma-28 factor | 7.10e-05 | NA | 3.52e-08 | 0.4637 |
| 3. BF | P50508 | RNA polymerase sigma factor RpoH | 1.77e-06 | NA | 5.79e-11 | 0.6393 |
| 3. BF | P0AGB5 | RNA polymerase sigma factor RpoH | 4.27e-06 | NA | 1.81e-11 | 0.625 |
| 3. BF | Q01624 | RNA polymerase sigma-B factor | 6.00e-09 | NA | 2.22e-22 | 0.7094 |
| 3. BF | Q9K5J6 | RNA polymerase sigma-B factor | 1.37e-07 | NA | 2.05e-07 | 0.6409 |
| 3. BF | P0A2E8 | RNA polymerase sigma factor FliA | 3.26e-04 | NA | 1.26e-09 | 0.3295 |
| 4. PB | P00579 | RNA polymerase sigma factor RpoD | 2.35e-07 | 1.19e-05 | 8.13e-81 | NA |
| 4. PB | P9WGI5 | RNA polymerase sigma factor SigB | 2.22e-16 | 6.24e-12 | 2.39e-63 | NA |
| 4. PB | P9WGI1 | RNA polymerase sigma factor SigA | 1.47e-11 | 1.32e-05 | 1.04e-72 | NA |
| 4. PB | Q9LD95 | RNA polymerase sigma factor sigF, chloroplastic | 1.44e-07 | 3.69e-07 | 1.37e-39 | NA |
| 4. PB | Q0J7T6 | RNA polymerase sigma factor sigA | 3.09e-07 | 1.32e-06 | 1.36e-24 | NA |
| 4. PB | O24629 | RNA polymerase sigma factor sigA | 1.08e-07 | 1.92e-08 | 1.46e-25 | NA |
| 4. PB | P0A0J0 | RNA polymerase sigma factor SigA | 1.10e-14 | 2.05e-33 | 2.32e-88 | NA |
| 4. PB | Q9ZNX9 | RNA polymerase sigma factor sigE, chloroplastic/mitochondrial | 3.27e-08 | 1.06e-05 | 2.79e-23 | NA |
| 4. PB | O22056 | RNA polymerase sigma factor sigB | 2.02e-08 | 1.09e-02 | 3.65e-41 | NA |
| 4. PB | P13445 | RNA polymerase sigma factor RpoS | 4.84e-13 | 1.35e-16 | 4.47e-58 | NA |
| 4. PB | Q9ZSL6 | RNA polymerase sigma factor sigD, chloroplastic | 2.76e-11 | 2.15e-07 | 4.89e-33 | NA |
| 7. B | P0AGB3 | RNA polymerase sigma factor RpoH | 1.92e-06 | NA | 1.81e-11 | NA |
| 7. B | P43344 | RNA polymerase sigma factor RpoD (Fragment) | NA | NA | 5.60e-74 | NA |
| 7. B | P0AEM6 | RNA polymerase sigma factor FliA | 1.16e-03 | NA | 2.79e-07 | NA |
| 7. B | Q8NEZ4 | Histone-lysine N-methyltransferase 2C | NA | NA | 0.035 | NA |
| 7. B | P9WGI3 | RNA polymerase sigma factor SigF | 6.87e-08 | NA | 3.07e-13 | NA |
| 7. B | P29248 | RNA polymerase sigma factor FliA | 4.48e-05 | NA | 0.013 | NA |
| 7. B | O24621 | RNA polymerase sigma factor sigC | 3.16e-06 | NA | 2.29e-26 | NA |