Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54801.1
JCVISYN3A_0440
Uncharacterized lipoprotein.
M. mycoides homolog: Q6MTA8.
TIGRfam Classification: 1=Unknown.
Category: Essential.
Statistics
Total GO Annotation: 17
Unique PROST Go: 17
Unique BLAST Go: 0
Unique Foldseek Go: 0
Total Homologs: 31
Unique PROST Homologs: 31
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by was
() with a FATCAT P-Value: NA and RMSD of angstrom. The sequence alignment identity is NA.
Structural alignment shown in left. Query protein AVX54801.1 colored as red in alignment, homolog colored as blue.
Query protein AVX54801.1 is also shown in right top, homolog showed in right bottom. They are colored based on secondary structures.
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 5. P | GO:0099008 | viral entry via permeabilization of inner membrane |
| 5. P | GO:0044175 | host cell endosome membrane |
| 5. P | GO:0039625 | viral inner capsid |
| 5. P | GO:0005198 | structural molecule activity |
| 5. P | GO:0044168 | host cell rough endoplasmic reticulum |
| 5. P | GO:0044172 | host cell endoplasmic reticulum-Golgi intermediate compartment |
| 5. P | GO:0039624 | viral outer capsid |
| 5. P | GO:0020002 | host cell plasma membrane |
| 5. P | GO:0042025 | host cell nucleus |
| 5. P | GO:0075521 | microtubule-dependent intracellular transport of viral material towards nucleus |
| 5. P | GO:0039623 | T=25 icosahedral viral capsid |
| 5. P | GO:0039619 | T=4 icosahedral viral capsid |
| 5. P | GO:0039665 | permeabilization of host organelle membrane involved in viral entry into host cell |
| 5. P | GO:0019062 | virion attachment to host cell |
| 5. P | GO:0044178 | host cell Golgi membrane |
| 5. P | GO:0033644 | host cell membrane |
| 5. P | GO:0046718 | viral entry into host cell |
Uniprot GO Annotations
| GO | Description |
|---|
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 5. P | P11819 | Hexon protein | NA | 5.46e-04 | NA | NA |
| 5. P | P33474 | Core protein VP3 | NA | 2.87e-02 | NA | NA |
| 5. P | P35934 | Structural core protein VP2 | NA | 9.37e-03 | NA | NA |
| 5. P | Q82040 | Outer capsid protein VP4 | NA | 6.93e-03 | NA | NA |
| 5. P | Q04464 | Envelope glycoprotein B | NA | 1.91e-02 | NA | NA |
| 5. P | P75405 | Uncharacterized protein MPN_376 | 6.56e-01 | 4.64e-02 | NA | NA |
| 5. P | P56582 | Core protein VP3 | NA | 2.90e-02 | NA | NA |
| 5. P | P12435 | Core protein VP3 | NA | 9.09e-03 | NA | NA |
| 5. P | P36854 | Hexon protein | NA | 2.91e-03 | NA | NA |
| 5. P | Q65749 | Core protein VP3 | NA | 1.57e-02 | NA | NA |
| 5. P | Q01007 | Gene 24 protein | NA | 2.79e-03 | NA | NA |
| 5. P | Q65748 | Core protein VP3 | NA | 2.62e-03 | NA | NA |
| 5. P | Q65955 | Hexon protein | NA | 3.26e-03 | NA | NA |
| 5. P | P20608 | Core protein VP3 | NA | 3.02e-02 | NA | NA |
| 5. P | P19900 | Hexon protein | NA | 8.21e-05 | NA | NA |
| 5. P | P15892 | Uncharacterized protein ORF1 | NA | 5.58e-04 | NA | NA |
| 5. P | Q88418 | Uncharacterized protein ORF1 | NA | 3.27e-04 | NA | NA |
| 5. P | O39619 | Hexon protein | NA | 3.88e-03 | NA | NA |
| 5. P | Q65750 | Core protein VP3 | NA | 5.83e-03 | NA | NA |
| 5. P | Q6R7K2 | Uncharacterized protein ORF21 | NA | 1.68e-02 | NA | NA |
| 5. P | O71025 | Core protein VP3 | NA | 2.27e-03 | NA | NA |
| 5. P | Q9YTR8 | Hexon protein | NA | 1.34e-02 | NA | NA |
| 5. P | Q6UBL8 | Polymerase basic protein 2 | NA | 3.39e-02 | NA | NA |
| 5. P | P48308 | Hexon protein | NA | 4.43e-02 | NA | NA |
| 5. P | P11820 | Hexon protein | NA | 2.25e-04 | NA | NA |
| 5. P | P03539 | Core protein VP3 | NA | 2.79e-03 | NA | NA |
| 5. P | P75072 | Uncharacterized protein MPN_042 | 6.82e-01 | 2.74e-02 | NA | NA |
| 5. P | Q9YRB2 | Capsid protein | NA | 5.33e-03 | NA | NA |
| 5. P | P03278 | Hexon protein | NA | 1.29e-03 | NA | NA |
| 5. P | P32509 | Core protein VP3 | NA | 2.11e-02 | NA | NA |
| 5. P | P42671 | Hexon protein | NA | 4.25e-04 | NA | NA |