Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54807.1
JCVISYN3A_0447
dUTP diphosphatase.
M. mycoides homolog: Q6MTA1.
TIGRfam Classification: 2=Generic.
Category: Essential.
Statistics
Total GO Annotation: 7
Unique PROST Go: 7
Unique BLAST Go: 0
Unique Foldseek Go: 0
Total Homologs: 17
Unique PROST Homologs: 17
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by 5. P was
Q6VN46
(Myoglobin) with a FATCAT P-Value: 0.000482 and RMSD of 1.77 angstrom. The sequence alignment identity is 21.7%.
Structural alignment shown in left. Query protein AVX54807.1 colored as red in alignment, homolog Q6VN46 colored as blue.
Query protein AVX54807.1 is also shown in right top, homolog Q6VN46 showed in right bottom. They are colored based on secondary structures.
AVX54807.1 MIDNK-TLK-WLSEKQIILDQFIQN---KWN--FKN--DKTL-LDKKLTAFLVELGEYANEERSFKYWSN--KKPSDLEIQLDEYIDGIH-FIIS-VGN- 85 Q6VN46 MADHDLVLKCW---GAVEAD-YAANGGEVLNRLFKEYPD-TLKLFPKFSG--ISQGDLAGSPAVAAHGATVLKKLGEL---LKA--KGDHAALLKPLANT 88 AVX54807.1 QINYNFLEFNYNF-LNKESIIDIYFEIISC-LNSFIKENNNTNYSNLLNAFLNICEIKNYTQDQIINAYNIKNEINFQRQNNNY 167 Q6VN46 HANIHKVALN-NFRLITEVLVKVMAE--KAGLDA---AGQGA-LRRVMDAVIG--DIDGY--------Y--K-EIGFAG----- 147
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 5. P | GO:0015671 | oxygen transport |
| 5. P | GO:0014823 | response to activity |
| 5. P | GO:0019825 | oxygen binding |
| 5. P | GO:0001570 | vasculogenesis |
| 5. P | GO:0048565 | digestive tract development |
| 5. P | GO:0001666 | response to hypoxia |
| 5. P | GO:0005344 | oxygen carrier activity |
Uniprot GO Annotations
| GO | Description |
|---|
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 5. P | Q6VN46 | Myoglobin | 4.82e-04 | 2.92e-02 | NA | NA |
| 5. P | B4THE2 | UPF0149 protein YgfB | 1.51e-03 | 1.82e-02 | NA | NA |
| 5. P | B5QXI6 | UPF0149 protein YgfB | 1.58e-03 | 1.82e-02 | NA | NA |
| 5. P | B5FUH3 | UPF0149 protein YgfB | 1.59e-03 | 1.82e-02 | NA | NA |
| 5. P | P51714 | Uncharacterized 18.2 kDa protein in rep-hol intergenic region | NA | 1.33e-11 | NA | NA |
| 5. P | B7V5B5 | UPF0149 protein PLES_56191 | 2.26e-03 | 4.95e-02 | NA | NA |
| 5. P | Q9HTW5 | UPF0149 protein PA5225 | 2.19e-03 | 4.95e-02 | NA | NA |
| 5. P | A6VDZ9 | UPF0149 protein PSPA7_5968 | 2.19e-03 | 4.30e-02 | NA | NA |
| 5. P | B5RE20 | UPF0149 protein YgfB | 1.58e-03 | 1.82e-02 | NA | NA |
| 5. P | B5F5I5 | UPF0149 protein YgfB | 1.61e-03 | 1.82e-02 | NA | NA |
| 5. P | P39789 | Uncharacterized protein YpoC | 3.18e-03 | 1.36e-03 | NA | NA |
| 5. P | Q8ZM71 | UPF0149 protein YgfB | 1.59e-03 | 1.82e-02 | NA | NA |
| 5. P | C0PY33 | UPF0149 protein YgfB | 1.59e-03 | 1.82e-02 | NA | NA |
| 5. P | Q02ED9 | UPF0149 protein PA14_69010 | 2.12e-03 | 4.95e-02 | NA | NA |
| 5. P | B4TV29 | UPF0149 protein YgfB | 1.60e-03 | 1.82e-02 | NA | NA |
| 5. P | Q8Z3W5 | UPF0149 protein YgfB | 1.59e-03 | 1.78e-02 | NA | NA |
| 5. P | B4T555 | UPF0149 protein YgfB | 1.59e-03 | 1.82e-02 | NA | NA |