Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54827.1
JCVISYN3A_0505
Uncharacterized lipoprotein.
M. mycoides homolog: Q6MT38.
TIGRfam Classification: 2=Generic.
Category: Nonessential.
Statistics
Total GO Annotation: 23
Unique PROST Go: 10
Unique BLAST Go: 13
Unique Foldseek Go: 0
Total Homologs: 19
Unique PROST Homologs: 16
Unique BLAST Homologs: 3
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by was
() with a FATCAT P-Value: NA and RMSD of angstrom. The sequence alignment identity is NA.
Structural alignment shown in left. Query protein AVX54827.1 colored as red in alignment, homolog colored as blue.
Query protein AVX54827.1 is also shown in right top, homolog showed in right bottom. They are colored based on secondary structures.
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 5. P | GO:0019684 | photosynthesis, light reaction |
| 5. P | GO:0005618 | cell wall |
| 5. P | GO:0020037 | heme binding |
| 5. P | GO:0030077 | plasma membrane light-harvesting complex |
| 5. P | GO:0042717 | plasma membrane-derived chromatophore membrane |
| 5. P | GO:0015232 | heme transmembrane transporter activity |
| 5. P | GO:0009055 | electron transfer activity |
| 5. P | GO:0046872 | metal ion binding |
| 5. P | GO:0005576 | extracellular region |
| 5. P | GO:0005506 | iron ion binding |
| 7. B | GO:0004402 | histone acetyltransferase activity |
| 7. B | GO:0016298 | lipase activity |
| 7. B | GO:0000812 | Swr1 complex |
| 7. B | GO:0016604 | nuclear body |
| 7. B | GO:0016458 | obsolete gene silencing |
| 7. B | GO:0004386 | helicase activity |
| 7. B | GO:0003713 | transcription coactivator activity |
| 7. B | GO:0043486 | histone exchange |
| 7. B | GO:0016042 | lipid catabolic process |
| 7. B | GO:0043044 | |
| 7. B | GO:0042393 | histone binding |
| 7. B | GO:0032991 | protein-containing complex |
| 7. B | GO:0070615 |
Uniprot GO Annotations
| GO | Description |
|---|
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 5. P | Q8NX66 | Iron-regulated surface determinant protein B | 2.82e-01 | 1.10e-02 | NA | NA |
| 5. P | Q6GA86 | Iron-regulated surface determinant protein B | 4.59e-01 | 9.81e-03 | NA | NA |
| 5. P | Q40237 | Major pollen allergen Lol p 5b | 8.86e-02 | 1.72e-03 | NA | NA |
| 5. P | Q7A656 | Iron-regulated surface determinant protein B | 4.59e-01 | 7.37e-03 | NA | NA |
| 5. P | A7X146 | Iron-regulated surface determinant protein B | 5.90e-01 | 7.37e-03 | NA | NA |
| 5. P | P0C7J5 | Iron-regulated surface determinant protein B | 5.08e-01 | 1.10e-02 | NA | NA |
| 5. P | A6U0U6 | Iron-regulated surface determinant protein B | 4.06e-01 | 7.37e-03 | NA | NA |
| 5. P | Q2FZF0 | Iron-regulated surface determinant protein B | 5.13e-01 | 1.10e-02 | NA | NA |
| 5. P | Q99UX5 | Iron-regulated surface determinant protein B | 5.77e-01 | 7.37e-03 | NA | NA |
| 5. P | P75255 | Uncharacterized lipoprotein MG348 homolog | 4.44e-01 | 1.66e-02 | NA | NA |
| 5. P | Q5HGV5 | Iron-regulated surface determinant protein B | 4.39e-01 | 1.10e-02 | NA | NA |
| 5. P | O82947 | Photosynthetic reaction center cytochrome c subunit | 1.75e-01 | 1.27e-02 | NA | NA |
| 5. P | A5IS15 | Iron-regulated surface determinant protein B | 4.52e-01 | 7.37e-03 | NA | NA |
| 5. P | Q2FHV2 | Iron-regulated surface determinant protein B | 4.12e-01 | 1.10e-02 | NA | NA |
| 5. P | P51758 | Photosynthetic reaction center cytochrome c subunit | 3.93e-01 | 3.97e-03 | NA | NA |
| 5. P | A6QG30 | Iron-regulated surface determinant protein B | 2.94e-01 | 1.10e-02 | NA | NA |
| 7. B | P0DKJ6 | GDSL esterase/lipase At1g20120 | 4.13e-01 | NA | 0.001 | NA |
| 7. B | Q6ZRS2 | Helicase SRCAP | NA | NA | 0.037 | NA |
| 7. B | C3PH19 | Translation initiation factor IF-2 | 8.29e-01 | NA | 0.028 | NA |