Summary

The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.

AVX54831.1
JCVISYN3A_0515

Cytidine deaminase.
M. mycoides homolog: Q6MT32.
TIGRfam Classification: 4=Probable.
Category: Quasiessential.

Statistics

Total GO Annotation: 65
Unique PROST Go: 29
Unique BLAST Go: 1
Unique Foldseek Go: 6

Total Homologs: 150
Unique PROST Homologs: 32
Unique BLAST Homologs: 8
Unique Foldseek Homologs: 62

Literature

Danchin and Fang [1]: NA
Yang and Tsui [2]: NA
Antczak et al. [3]: Cytidine/deoxycytidylate deaminase
Zhang et al. [4]: GO:0004132|dCMP deaminase activity
Bianchi et al. [5]: NA

Structures and Sequence Alignment

The best structural homolog that predicted by 1. PBF was Q5RC69 (Deoxycytidylate deaminase) with a FATCAT P-Value: 0 and RMSD of 1.39 angstrom. The sequence alignment identity is 47.8%.
Structural alignment shown in left. Query protein AVX54831.1 colored as red in alignment, homolog Q5RC69 colored as blue. Query protein AVX54831.1 is also shown in right top, homolog Q5RC69 showed in right bottom. They are colored based on secondary structures.

  AVX54831.1 MS-----KRLDYLSWQHYFMLIAKASAMRSKDPNTQVGAIVVNELQQIVATGYNGFPRGVSDDEFPW---SKNNEDWLENKYAYVAHAELNAIVSSRS-D 91
      Q5RC69 MSEVSCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPWRRTAKNK---LDTKYPYVCHAELNAIMNKNSTD 97

  AVX54831.1 LSNCDLYVTLFPCNECAKIIIQAGIKRIYYANDPYHDKKEFIASKKMLDAVNIKYIK-LP-------DIE-I----SLKVKD 160
      Q5RC69 VKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFDMAGVTFRKFIPKCSKIVIDFDSINSRPSQKLQ- 178

Go Annotations

1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.

Source GO Description
1. PBF GO:0070383 DNA cytosine deamination
1. PBF GO:0004132 dCMP deaminase activity
1. PBF GO:0002100 tRNA wobble adenosine to inosine editing
1. PBF GO:0006220 pyrimidine nucleotide metabolic process
1. PBF GO:0008270 zinc ion binding
1. PBF GO:0047844 deoxycytidine deaminase activity
1. PBF GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
1. PBF GO:0052717 tRNA-specific adenosine-34 deaminase activity
1. PBF GO:0004126 cytidine deaminase activity
1. PBF GO:0009231 riboflavin biosynthetic process
1. PBF GO:0009165 nucleotide biosynthetic process
2. PF GO:0006152 purine nucleoside catabolic process
2. PF GO:0006147 guanine catabolic process
2. PF GO:0016554 cytidine to uridine editing
2. PF GO:0047974 guanosine deaminase activity
2. PF GO:0010529 negative regulation of transposition
2. PF GO:0008251 tRNA-specific adenosine deaminase activity
2. PF GO:0008892 guanine deaminase activity
3. BF GO:0061676 importin-alpha family protein binding
3. BF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
3. BF GO:0050661 NADP binding
4. PB GO:0004131 cytosine deaminase activity
4. PB GO:0019858 cytosine metabolic process
4. PB GO:0006231 dTMP biosynthetic process
4. PB GO:0102480 5-fluorocytosine deaminase activity
4. PB GO:0006226 dUMP biosynthetic process
4. PB GO:0042802 identical protein binding
4. PB GO:0009972 cytidine deamination
4. PB GO:0044206 UMP salvage
5. P GO:0034774 secretory granule lumen
5. P GO:1904724 tertiary granule lumen
5. P GO:0006382 adenosine to inosine editing
5. P GO:0046087 cytidine metabolic process
5. P GO:0046677 response to antibiotic
5. P GO:0044355 clearance of foreign intracellular DNA
5. P GO:0016556 mRNA modification
5. P GO:0006249 dCMP catabolic process
5. P GO:0006397 mRNA processing
5. P GO:0006216 cytidine catabolic process
5. P GO:0045087 innate immune response
5. P GO:0047711 blasticidin-S deaminase activity
5. P GO:1904813 ficolin-1-rich granule lumen
5. P GO:0005634 nucleus
5. P GO:0030308 negative regulation of cell growth
5. P GO:0001882 nucleoside binding
5. P GO:0045869 negative regulation of single stranded viral RNA replication via double stranded DNA intermediate
5. P GO:0019239 deaminase activity
5. P GO:0051607 defense response to virus
5. P GO:0043100 pyrimidine nucleobase salvage
5. P GO:0006248 CMP catabolic process
5. P GO:0000932 P-body
5. P GO:0006217 deoxycytidine catabolic process
5. P GO:0080111 DNA demethylation
5. P GO:0071466 cellular response to xenobiotic stimulus
5. P GO:0008655 pyrimidine-containing compound salvage
5. P GO:0046109 uridine biosynthetic process
5. P GO:0045980 negative regulation of nucleotide metabolic process
5. P GO:0045071 negative regulation of viral genome replication
6. F GO:0048525 negative regulation of viral process
6. F GO:0016879 ligase activity, forming carbon-nitrogen bonds
6. F GO:0006189 'de novo' IMP biosynthetic process
6. F GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
6. F GO:0003937 IMP cyclohydrolase activity
6. F GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity
7. B GO:0042803 protein homodimerization activity

Uniprot GO Annotations

GO Description
GO:0004132 dCMP deaminase activity
GO:0006220 pyrimidine nucleotide metabolic process
GO:0008270 zinc ion binding
GO:0003824 catalytic activity
GO:0046872 metal ion binding
GO:0016787 hydrolase activity

Homologs

1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.

Source Homolog Description Fatcat Pvalue PROST Evalue BLAST Evalue Foldseek TMScore
1. PBF A9CK16 tRNA-specific adenosine deaminase 3.58e-06 2.80e-12 2.03e-04 0.5224
1. PBF Q8K9R4 tRNA-specific adenosine deaminase 1.32e-09 3.30e-20 0.004 0.6396
1. PBF Q4UJW9 tRNA-specific adenosine deaminase 4.63e-07 4.08e-12 5.30e-05 0.4265
1. PBF P44931 tRNA-specific adenosine deaminase 4.97e-06 9.88e-08 0.001 0.5305
1. PBF Q1RGK7 tRNA-specific adenosine deaminase 6.28e-07 1.21e-08 6.52e-06 0.4208
1. PBF P57343 tRNA-specific adenosine deaminase 3.04e-08 3.69e-11 0.013 0.6313
1. PBF Q92G39 tRNA-specific adenosine deaminase 7.75e-07 1.31e-03 1.24e-05 0.4046
1. PBF Q68Y02 tRNA-specific adenosine deaminase 4.19e-07 7.06e-06 0.001 0.4192
1. PBF Q7CQ08 tRNA-specific adenosine deaminase 2.31e-05 1.52e-06 0.008 0.6569
1. PBF Q8FF24 tRNA-specific adenosine deaminase 1.37e-05 1.68e-08 0.028 0.4928
1. PBF Q8XA44 tRNA-specific adenosine deaminase 1.36e-05 1.68e-08 0.028 0.5147
1. PBF Q99W51 tRNA-specific adenosine deaminase 5.67e-06 1.60e-11 3.53e-04 0.5265
1. PBF P33968 Uncharacterized deaminase in luxG 3'region 2.81e-14 1.40e-43 5.90e-25 0.839
1. PBF Q8XGY4 tRNA-specific adenosine deaminase 2.87e-05 1.52e-06 0.008 0.5115
1. PBF P32393 ComE operon protein 2 2.81e-12 1.17e-07 1.51e-17 0.8011
1. PBF Q5RC69 Deoxycytidylate deaminase 0.00e+00 1.91e-55 4.73e-54 0.9208
1. PBF Q9ZCC6 tRNA-specific adenosine deaminase 5.59e-07 2.02e-05 3.78e-04 0.4155
1. PBF O67050 tRNA-specific adenosine deaminase 1.83e-06 9.21e-11 0.004 0.6256
2. PF Q0P4H0 tRNA-specific adenosine deaminase 2 1.59e-07 9.08e-09 NA 0.4154
2. PF Q4V7V8 tRNA-specific adenosine deaminase 2 2.03e-05 1.87e-11 NA 0.4756
2. PF P21335 tRNA-specific adenosine deaminase 4.08e-06 6.69e-06 NA 0.5077
2. PF P0DA20 tRNA-specific adenosine deaminase 1.04e-05 3.39e-06 NA 0.508
2. PF Q8P2R7 tRNA-specific adenosine deaminase 7.20e-06 2.23e-12 NA 0.469
2. PF Q5E9J7 tRNA-specific adenosine deaminase 2 4.13e-07 4.19e-17 NA 0.4387
2. PF Q89AM8 tRNA-specific adenosine deaminase 4.26e-08 1.43e-06 NA 0.5912
2. PF P68999 tRNA-specific adenosine deaminase 1.04e-05 1.77e-06 NA 0.4662
2. PF O34598 Guanine deaminase 1.31e-05 4.11e-10 NA 0.4895
2. PF P68397 tRNA-specific adenosine deaminase 1.43e-05 1.55e-08 NA 0.5148
2. PF Q5XE14 tRNA-specific adenosine deaminase 1.06e-05 3.39e-06 NA 0.4616
2. PF P0DA21 tRNA-specific adenosine deaminase 1.03e-05 3.39e-06 NA 0.5041
3. BF C1D1Q9 tRNA(Ile)-lysidine synthase 4.28e-03 NA 0.012 0.4809
3. BF Q9Z735 Riboflavin biosynthesis protein RibD 3.86e-06 NA 0.001 0.656
3. BF Q4R683 Cytidine and dCMP deaminase domain-containing protein 1 1.26e-07 NA 5.79e-11 0.7382
3. BF P17618 Riboflavin biosynthesis protein RibD 3.67e-06 NA 9.41e-06 0.6553
3. BF P50853 Riboflavin biosynthesis protein RibD 1.26e-05 NA 8.12e-05 0.632
3. BF Q5RAX4 Cytidine and dCMP deaminase domain-containing protein 1 3.72e-06 NA 5.26e-11 0.7597
4. PB P00814 Deoxycytidylate deaminase NA 7.80e-32 7.10e-08 NA
4. PB P16006 Deoxycytidylate deaminase NA 2.33e-33 6.31e-07 NA
4. PB Q8K9A4 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase 1.94e-09 2.93e-05 0.006 NA
4. PB Q8K2D6 Deoxycytidylate deaminase 0.00e+00 3.90e-56 2.00e-52 NA
4. PB P78594 Cytosine deaminase 1.80e-08 2.97e-18 5.60e-04 NA
4. PB O59834 Probable cytosine deaminase 6.81e-06 1.06e-11 0.001 NA
4. PB P32321 Deoxycytidylate deaminase 0.00e+00 5.73e-56 2.46e-53 NA
4. PB O22000 Deoxycytidylate deaminase NA 4.11e-10 1.08e-15 NA
4. PB P57533 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase 2.28e-09 1.83e-04 0.002 NA
4. PB P30648 Probable deoxycytidylate deaminase 2.22e-16 2.36e-10 5.03e-43 NA
4. PB Q5M9G0 Deoxycytidylate deaminase 0.00e+00 3.90e-56 2.00e-52 NA
4. PB Q9VWA2 Probable deoxycytidylate deaminase 0.00e+00 6.70e-31 8.20e-52 NA
5. P Q9KD53 Cytidine deaminase 8.47e-06 6.01e-05 NA NA
5. P P0C2P0 Blasticidin-S deaminase 2.58e-04 4.75e-07 NA NA
5. P P47718 Cytidine deaminase 3.81e-06 9.33e-11 NA NA
5. P Q9S3M0 Cytidine deaminase 1.12e-05 2.92e-06 NA NA
5. P P56389 Cytidine deaminase 6.32e-05 7.29e-10 NA NA
5. P P9WPH3 Cytidine deaminase 5.39e-06 3.74e-08 NA NA
5. P Q3SYR3 Probable C->U-editing enzyme APOBEC-2 1.08e-03 2.89e-08 NA NA
5. P Q7Z6V5 tRNA-specific adenosine deaminase 2 3.79e-07 3.99e-14 NA NA
5. P P68398 tRNA-specific adenosine deaminase 1.42e-05 1.55e-08 NA NA
5. P Q4VDN5 DNA dC->dU-editing enzyme APOBEC-3Ca 1.65e-04 1.46e-06 NA NA
5. P P32320 Cytidine deaminase 3.70e-06 8.87e-09 NA NA
5. P Q94BU8 Guanosine deaminase 1.61e-07 6.53e-22 NA NA
5. P Q6P6J0 tRNA-specific adenosine deaminase 2 4.17e-07 2.90e-16 NA NA
5. P P9WPH2 Cytidine deaminase 5.45e-06 3.74e-08 NA NA
5. P Q54I82 Probable cytidine deaminase 1.10e-05 2.89e-08 NA NA
5. P P0CI02 Blasticidin-S deaminase 2.50e-04 8.26e-07 NA NA
5. P Q694B5 DNA dC->dU-editing enzyme APOBEC-3C 1.74e-04 1.03e-04 NA NA
5. P Q6IDB6 tRNA-specific adenosine deaminase TAD2 1.82e-07 4.44e-07 NA NA
5. P Q06549 Cytidine deaminase 9.16e-06 1.65e-09 NA NA
5. P Q12178 Cytosine deaminase 4.55e-08 9.52e-31 NA NA
5. P Q09190 Putative cytidine deaminase 5.86e-07 5.18e-08 NA NA
5. P Q9WV35 C->U-editing enzyme APOBEC-2 1.81e-03 5.19e-07 NA NA
5. P P75051 Cytidine deaminase 1.11e-05 1.69e-09 NA NA
5. P P0C2P1 Blasticidin-S deaminase 2.29e-04 5.02e-07 NA NA
5. P P31941 DNA dC->dU-editing enzyme APOBEC-3A 2.12e-03 2.86e-02 NA NA
5. P Q9Y235 C->U-editing enzyme APOBEC-2 2.04e-03 1.04e-08 NA NA
5. P P19079 Cytidine deaminase 1.19e-05 2.59e-06 NA NA
5. P Q9NRW3 DNA dC->dU-editing enzyme APOBEC-3C 1.97e-04 1.61e-03 NA NA
5. P P47298 Cytidine deaminase 1.17e-05 1.40e-10 NA NA
5. P Q694B4 Probable C->U-editing enzyme APOBEC-2 1.97e-03 5.86e-07 NA NA
5. P P33967 Blasticidin-S deaminase 2.07e-04 5.95e-08 NA NA
5. P P34401 Uncharacterized protein F10E9.7 2.71e-10 5.63e-18 NA NA
6. F Q02Y66 Bifunctional purine biosynthesis protein PurH 5.62e-03 NA NA 0.4617
6. F Q5SI38 tRNA(Ile)-lysidine synthase 1.14e-02 NA NA 0.5909
6. F B1XS23 Bifunctional purine biosynthesis protein PurH 1.30e-03 NA NA 0.4451
6. F Q9CFG0 Bifunctional purine biosynthesis protein PurH 5.64e-03 NA NA 0.4508
6. F A7H375 Bifunctional purine biosynthesis protein PurH 9.44e-03 NA NA 0.4923
6. F Q049M1 Bifunctional purine biosynthesis protein PurH 8.47e-03 NA NA 0.51
6. F Q62HA6 Bifunctional purine biosynthesis protein PurH 9.00e-03 NA NA 0.4825
6. F Q13UC4 Bifunctional purine biosynthesis protein PurH 8.56e-03 NA NA 0.4688
6. F O84735 Riboflavin biosynthesis protein RibD 2.75e-06 NA NA 0.6479
6. F A9AH70 Bifunctional purine biosynthesis protein PurH 8.47e-03 NA NA 0.4766
6. F Q04EU6 Bifunctional purine biosynthesis protein PurH 2.52e-03 NA NA 0.4854
6. F Q1G9G2 Bifunctional purine biosynthesis protein PurH 8.84e-03 NA NA 0.5111
6. F O67775 Bifunctional purine biosynthesis protein PurH 8.19e-03 NA NA 0.5
6. F C1D6F1 Bifunctional purine biosynthesis protein PurH 1.68e-02 NA NA 0.5024
6. F A4XKZ2 Bifunctional purine biosynthesis protein PurH 6.74e-03 NA NA 0.5147
6. F Q8DRM1 Bifunctional purine biosynthesis protein PurH 1.01e-02 NA NA 0.4669
6. F A2BUP7 Bifunctional purine biosynthesis protein PurH 1.64e-02 NA NA 0.5085
6. F Q8TWU6 tRNA(cytosine(8)) deaminase 4.42e-05 NA NA 0.515
6. F Q7P0M1 Bifunctional purine biosynthesis protein PurH 1.18e-02 NA NA 0.4932
6. F B7J5P7 Bifunctional purine biosynthesis protein PurH 1.45e-02 NA NA 0.491
6. F A5VHU2 Bifunctional purine biosynthesis protein PurH 6.56e-03 NA NA 0.5203
6. F Q72IF6 tRNA(Ile)-lysidine synthase 8.02e-03 NA NA 0.5899
6. F A8FM07 Bifunctional purine biosynthesis protein PurH 9.30e-03 NA NA 0.492
6. F A4XQ60 Bifunctional purine biosynthesis protein PurH 1.82e-02 NA NA 0.4916
6. F Q5FIV5 Bifunctional purine biosynthesis protein PurH 7.81e-03 NA NA 0.4705
6. F Q9RV23 tRNA(Ile)-lysidine synthase 1.27e-02 NA NA 0.4698
6. F A6TLS7 Bifunctional purine biosynthesis protein PurH 8.20e-03 NA NA 0.517
6. F Q1WBT4 DNA dC->dU-editing enzyme APOBEC-3H 6.44e-04 NA NA 0.4379
6. F A3MP76 Bifunctional purine biosynthesis protein PurH 9.09e-03 NA NA 0.4825
6. F A2S597 Bifunctional purine biosynthesis protein PurH 9.09e-03 NA NA 0.4823
6. F B2A5W1 Bifunctional purine biosynthesis protein PurH 9.37e-03 NA NA 0.5288
6. F A1V068 Bifunctional purine biosynthesis protein PurH 8.55e-03 NA NA 0.4829
6. F Q03MZ6 Bifunctional purine biosynthesis protein PurH 9.41e-03 NA NA 0.481
6. F B1I7V8 Bifunctional purine biosynthesis protein PurH 1.01e-02 NA NA 0.4667
6. F Q1BZ33 Bifunctional purine biosynthesis protein PurH 8.23e-03 NA NA 0.4638
6. F A3NDF2 Bifunctional purine biosynthesis protein PurH 8.85e-03 NA NA 0.4828
6. F Q5HUK6 Bifunctional purine biosynthesis protein PurH 9.48e-03 NA NA 0.4919
6. F A2RJY0 Bifunctional purine biosynthesis protein PurH 5.63e-03 NA NA 0.4655
6. F B3ELV3 Bifunctional purine biosynthesis protein PurH 1.53e-02 NA NA 0.4618
6. F Q1LRB3 Bifunctional purine biosynthesis protein PurH 8.85e-03 NA NA 0.4668
6. F Q1H4G7 Bifunctional purine biosynthesis protein PurH 1.03e-02 NA NA 0.4973
6. F B5EL42 Bifunctional purine biosynthesis protein PurH 1.38e-02 NA NA 0.5045
6. F B4UJ61 Bifunctional purine biosynthesis protein PurH 7.65e-03 NA NA 0.4732
6. F Q2IKQ7 Bifunctional purine biosynthesis protein PurH 6.67e-03 NA NA 0.4778
6. F Q1WU55 Bifunctional purine biosynthesis protein PurH 6.31e-03 NA NA 0.513
6. F Q03Y85 Bifunctional purine biosynthesis protein PurH 7.76e-03 NA NA 0.4833
6. F B8JHC9 Bifunctional purine biosynthesis protein PurH 8.02e-03 NA NA 0.4841
6. F A1VZU4 Bifunctional purine biosynthesis protein PurH 9.78e-03 NA NA 0.4949
6. F B9MS89 Bifunctional purine biosynthesis protein PurH 6.56e-03 NA NA 0.5153
6. F Q9PLJ6 Riboflavin biosynthesis protein RibD 2.32e-06 NA NA 0.653
6. F Q89B23 Bifunctional purine biosynthesis protein PurH 1.21e-02 NA NA 0.4998
6. F A7GYY6 Bifunctional purine biosynthesis protein PurH 1.03e-02 NA NA 0.5081
6. F A0LDB0 Bifunctional purine biosynthesis protein PurH 1.25e-02 NA NA 0.4396
6. F A8MLI9 Bifunctional purine biosynthesis protein PurH 7.66e-03 NA NA 0.5223
6. F Q8Y232 Bifunctional purine biosynthesis protein PurH 1.63e-02 NA NA 0.4764
6. F B2AH76 Bifunctional purine biosynthesis protein PurH 8.91e-03 NA NA 0.4674
6. F A7HA60 Bifunctional purine biosynthesis protein PurH 6.73e-03 NA NA 0.4843
6. F Q0KEC0 Bifunctional purine biosynthesis protein PurH 8.56e-03 NA NA 0.4744
6. F B2G5C2 Bifunctional purine biosynthesis protein PurH 6.19e-03 NA NA 0.4863
6. F B4EES4 Bifunctional purine biosynthesis protein PurH 7.95e-03 NA NA 0.4897
6. F Q9PNY2 Bifunctional purine biosynthesis protein PurH 8.99e-03 NA NA 0.4947
6. F A7ZCZ7 Bifunctional purine biosynthesis protein PurH 9.93e-03 NA NA 0.4919
7. B O24750 Riboflavin biosynthesis protein RibD 2.76e-05 NA 4.58e-04 NA
7. B O43012 Deoxycytidylate deaminase 3.91e-09 NA 7.68e-11 NA
7. B P70814 Riboflavin biosynthesis protein RibD 3.51e-06 NA 2.23e-07 NA
7. B P06773 Deoxycytidylate deaminase 7.37e-10 NA 1.11e-13 NA
7. B Q5U3U4 Cytidine and dCMP deaminase domain-containing protein 1 1.21e-08 NA 8.18e-14 NA
7. B O66534 Riboflavin biosynthesis protein RibD 8.59e-06 NA 4.86e-05 NA
7. B Q8BMD5 Cytidine and dCMP deaminase domain-containing protein 1 2.29e-06 NA 9.72e-12 NA
7. B Q9BWV3 Cytidine and dCMP deaminase domain-containing protein 1 1.47e-06 NA 6.13e-11 NA