Summary

The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.

AVX54843.1
JCVISYN3A_0527

Uncharacterized protein.
M. mycoides homolog: Q6MT19.
TIGRfam Classification: NA.
Category: Nonessential.

Statistics

Total GO Annotation: 2
Unique PROST Go: 0
Unique BLAST Go: 0
Unique Foldseek Go: 0

Total Homologs: 11
Unique PROST Homologs: 2
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0

Literature

Danchin and Fang [1]: NA
Yang and Tsui [2]: NA
Antczak et al. [3]: NA
Zhang et al. [4]: GO:0006418|tRNA aminoacylation for protein translation
Bianchi et al. [5]: ylbN-like regulator of accumulation of 23S rRNA

Structures and Sequence Alignment

The best structural homolog that predicted by 2. PF was P43790 (Large ribosomal RNA subunit accumulation protein YceD) with a FATCAT P-Value: 1.72e-05 and RMSD of 3.20 angstrom. The sequence alignment identity is 23.1%.
Structural alignment shown in left. Query protein AVX54843.1 colored as red in alignment, homolog P43790 colored as blue. Query protein AVX54843.1 is also shown in right top, homolog P43790 showed in right bottom. They are colored based on secondary structures. 

  AVX54843.1 MKLIFNQTDFKLKKHYELQGQLTDLDQIKSNNILIRSFDFISY----DLD-L---------DYNETL-------KMITVNGVINYTITGID---SRIGNE 76
      P43790 MQ--------KVK----L--PLT-VDPIKDAQ---RRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQ--I-DVDLECQRC-NE 78

  AVX54843.1 -IK--------YSNYIDWN--DE----Y---SFTNSSDFNTNI-IINEEFNLKDYIIEQINLNIPFN------LSLNNDILNKYGLGWSLESEEEFQKSQ 151
      P43790 PYKQTLECEFTYSPVANWDQADDLPEIYEPIEF-N--EFG-EIDLIG---TVEDELILALPL-VPMHSSEHCEVSAQEQV---FGV---L--PEELAK-- 160

  AVX54843.1 ANKIDPRWEQLDNIKIDDNNK 172
      P43790 --KPNP-FAVLANLK----QK 174

Go Annotations

1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.

Source GO Description
2. PF GO:0042254 ribosome biogenesis
2. PF GO:0005829 cytosol

Uniprot GO Annotations

GO Description

Homologs

1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.

Source Homolog Description Fatcat Pvalue PROST Evalue BLAST Evalue Foldseek TMScore
2. PF O69468 Uncharacterized protein ML1660 4.84e-05 6.34e-08 NA 0.5818
2. PF P65058 Uncharacterized protein Mb2951c 3.76e-05 4.89e-09 NA 0.5531
2. PF P9WL16 Uncharacterized protein MT2996 4.30e-05 4.89e-09 NA 0.5353
2. PF P0AB30 Large ribosomal RNA subunit accumulation protein YceD 2.78e-04 8.29e-20 NA 0.6124
2. PF O34445 Uncharacterized protein YlbN 3.66e-07 1.23e-33 NA 0.6512
2. PF P43790 Large ribosomal RNA subunit accumulation protein YceD 1.72e-05 1.09e-20 NA 0.5482
2. PF P0A1T3 Large ribosomal RNA subunit accumulation protein YceD 2.27e-05 1.94e-21 NA 0.5998
2. PF P0AB29 Large ribosomal RNA subunit accumulation protein YceD 2.99e-04 8.29e-20 NA 0.6
2. PF P0A1T2 Large ribosomal RNA subunit accumulation protein YceD 2.21e-05 1.94e-21 NA 0.599
5. P P0AB28 Large ribosomal RNA subunit accumulation protein YceD 2.30e-05 8.29e-20 NA NA
5. P P9WL17 Uncharacterized protein Rv2926c 4.08e-05 4.89e-09 NA NA