Summary
The literature section presents previous knowledge about this protein. There have been five different efforts to annotate minimal organism genome. The annotations from those efforts are given in the Literature section for completeness.
AVX54867.1
JCVISYN3A_0605
Uncharacterized protein.
M. mycoides homolog: Q6MTL3.
TIGRfam Classification: NA.
Category: Nonessential.
Statistics
Total GO Annotation: 9
Unique PROST Go: 9
Unique BLAST Go: 0
Unique Foldseek Go: 0
Total Homologs: 13
Unique PROST Homologs: 13
Unique BLAST Homologs: 0
Unique Foldseek Homologs: 0
Structures and Sequence Alignment
The best structural homolog that predicted by 5. P was
P29230
(Variant surface antigen C) with a FATCAT P-Value: 0.0355 and RMSD of 2.88 angstrom. The sequence alignment identity is 16.5%.
Structural alignment shown in left. Query protein AVX54867.1 colored as red in alignment, homolog P29230 colored as blue.
Query protein AVX54867.1 is also shown in right top, homolog P29230 showed in right bottom. They are colored based on secondary structures.
AVX54867.1 MKK-ILT--LLCLIG-LIGLIGLTNLNVIGCGNKPNSKLNN-NNNNNKNDDYDFEIKSNKNNSEKDTKT---KPKTTSKILI----KPEIKPKLDVKPIT 88 P29230 MKKSIFSKKLLVSFGSLVALASIP-LIAISCGQTNTDKSQQPGSGSSTSGDQS--GTTTGGHSGSGTSTSGGQSGTTSGSGTTTGEQTETAPK---SPES 94 AVX54867.1 RSK--SDKRLKIIPHQ------------------------------------------------------ 102 P29230 GSQEATPKS----PESGSQEATPKSPESGSQEAAPKSSESGSQEAAPKSSESGSQEAAPKSSESGSQKTT 160
Go Annotations
1. PBF indicates the go terms that are found by both PROST and BLAST and Foldseek.
2. PF indicates the go terms that are found by only PROST and Foldseek.
3. BF indicates the go terms that are found by only BLAST and Foldseek.
4. PB indicates the go terms that are found by both PROST and BLAST.
5. P indicates the go terms that are found by only PROST.
6. F indicates the go terms that are found by only Foldseek.
7. B indicates the go terms that are found by only BLAST.
| Source | GO | Description |
|---|---|---|
| 5. P | GO:0007218 | neuropeptide signaling pathway |
| 5. P | GO:0042742 | defense response to bacterium |
| 5. P | GO:0005886 | plasma membrane |
| 5. P | GO:0050830 | defense response to Gram-positive bacterium |
| 5. P | GO:0045988 | negative regulation of striated muscle contraction |
| 5. P | GO:1903745 | negative regulation of pharyngeal pumping |
| 5. P | GO:0071244 | cellular response to carbon dioxide |
| 5. P | GO:0005576 | extracellular region |
| 5. P | GO:0009242 | colanic acid biosynthetic process |
Uniprot GO Annotations
| GO | Description |
|---|
Homologs
1. PBF indicates the homologs that are found by both PROST and BLAST and Foldseek.
2. PF indicates the homologs that are found by only PROST and Foldseek.
3. BF indicates the homologs that are found by only BLAST and Foldseek.
4. PB indicates the homologs that are found by both PROST and BLAST.
5. P indicates the homologs that are found by only PROST.
6. F indicates the homologs that are found by only Foldseek.
7. B indicates the homologs that are found by only BLAST.
| Source | Homolog | Description | Fatcat Pvalue | PROST Evalue | BLAST Evalue | Foldseek TMScore |
|---|---|---|---|---|---|---|
| 5. P | Q0J9V6 | Uncharacterized protein Os04g0629400 | 2.21e-02 | 1.25e-03 | NA | NA |
| 5. P | O32528 | Uncharacterized lipoprotein YpdI | 1.49e-01 | 2.21e-05 | NA | NA |
| 5. P | B5LUQ8 | Preprofallaxidin-6 | 1.68e-01 | 1.58e-03 | NA | NA |
| 5. P | P75137 | Uncharacterized lipoprotein MPN_654 | 6.80e-01 | 2.14e-03 | NA | NA |
| 5. P | P29230 | Variant surface antigen C | 3.55e-02 | 2.83e-06 | NA | NA |
| 5. P | P33383 | Uncharacterized protein Lmo0206 | 8.11e-02 | 3.20e-03 | NA | NA |
| 5. P | Q9L8P6 | Lipoprotein B | 5.78e-02 | 4.03e-03 | NA | NA |
| 5. P | Q49538 | Variant surface antigen F | 2.28e-01 | 9.36e-03 | NA | NA |
| 5. P | A8WTF8 | FMRFamide-like neuropeptides 16 | 5.40e-02 | 1.81e-02 | NA | NA |
| 5. P | B5LUR1 | Preprofallaxidin-9 | 2.34e-01 | 4.13e-02 | NA | NA |
| 5. P | Q54K71 | Spore germination protein 1/2/3-related protein | 2.56e-01 | 4.35e-02 | NA | NA |
| 5. P | O51025 | Uncharacterized lipoprotein BBF20 | 5.07e-01 | 1.23e-03 | NA | NA |
| 5. P | P29228 | Variant surface antigen A | 7.69e-02 | 2.92e-02 | NA | NA |